1. Update the modified package timestamp for new packages.

UPDATE Packages SET ModifiedTS = SubmittedTS WHERE ModifiedTS = 0;

2. Move to new method of storing package depends.

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ALTER TABLE PackageDepends ADD COLUMN DepName VARCHAR(64) NOT NULL DEFAULT '' AFTER PackageID;
UPDATE PackageDepends SET DepName = (SELECT Name FROM Packages WHERE ID = DepPkgID);
ALTER TABLE PackageDepends MODIFY DepName VARCHAR(64) NOT NULL;
ALTER TABLE PackageDepends DROP FOREIGN KEY `PackageDepends_ibfk_2`;
ALTER TABLE PackageDepends DROP COLUMN DepPkgID;
DELETE FROM Packages WHERE DummyPkg = 1;
ALTER TABLE Packages DROP COLUMN DummyPkg;
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3. The File_Find PEAR module is no longer required. You can safely uninstall it
if nothing else depends on it.
